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1.

CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.

Krysiak, Kilannin; Danos, Arpad M; Saliba, Jason; McMichael, Joshua F; Coffman, Adam C; Kiwala, Susanna; Barnell, Erica K; Sheta, Lana; Grisdale, Cameron J; Kujan, Lynzey; Pema, Shahil; Lever, Jake; Ridd, Sarah; Spies, Nicholas C; Andric, Veronica; Chiorean, Andreea; Rieke, Damian T; Clark, Kaitlin A; Reisle, Caralyn; Venigalla, Ajay C; Evans, Mark; Jani, Payal; Takahashi, Hideaki; Suda, Avila; Horak, Peter; Ritter, Deborah I; Zhou, Xin; Ainscough, Benjamin J; Delong, Sean; Kesserwan, Chimene; Lamping, Mario; Shen, Haolin; Marr, Alex R; Hoang, My H; Singhal, Kartik; Khanfar, Mariam; Li, Brian V; Lin, Wan-Hsin; Terraf, Panieh; Corson, Laura B; Salama, Yasser; Campbell, Katie M; Farncombe, Kirsten M; Ji, Jianling; Zhao, Xiaonan; Xu, Xinjie; Kanagal-Shamanna, Rashmi; King, Ian; Cotto, Kelsy C; Skidmore, Zachary L.

Nucleic Acids Res; 51(D1): D1230-D1241, 2023 01 06.

Artículo en Inglés | MEDLINE | ID: mdl-36373660

2.

Neoadjuvant Chemotherapy is Associated with Increased Risk of Postoperative DVT After Distal Pancreatectomy for Pancreatic Adenocarcinoma: a NSQIP Analysis.

Robbins, Keenan J; Newcomer, Kenneth F; Barnell, Erica K; Anzelmo, Michael A; Liu, Jingxia; Hawkins, William G.

Ann Surg Oncol; 31(5): 2873-2881, 2024 May.

Artículo en Inglés | MEDLINE | ID: mdl-38151621

3.

Multitarget Stool RNA Test for Colorectal Cancer Screening.

Barnell, Erica K; Wurtzler, Elizabeth M; La Rocca, Julie; Fitzgerald, Thomas; Petrone, Jessica; Hao, Yansheng; Kang, Yiming; Holmes, Faith L; Lieberman, David A.

JAMA; 330(18): 1760-1768, 2023 11 14.

Artículo en Inglés | MEDLINE | ID: mdl-37870871

4.

Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples.

Barnell, Erica K; Ronning, Peter; Campbell, Katie M; Krysiak, Kilannin; Ainscough, Benjamin J; Sheta, Lana M; Pema, Shahil P; Schmidt, Alina D; Richters, Megan; Cotto, Kelsy C; Danos, Arpad M; Ramirez, Cody; Skidmore, Zachary L; Spies, Nicholas C; Hundal, Jasreet; Sediqzad, Malik S; Kunisaki, Jason; Gomez, Felicia; Trani, Lee; Matlock, Matthew; Wagner, Alex H; Swamidass, S Joshua; Griffith, Malachi; Griffith, Obi L.

Genet Med; 21(4): 972-981, 2019 04.

Artículo en Inglés | MEDLINE | ID: mdl-30287923

5.

Multitarget Stool RNA Testing-Reply.

Barnell, Erica K; Lieberman, David A.

JAMA; 331(16): 1419-1420, 2024 04 23.

Artículo en Inglés | MEDLINE | ID: mdl-38557781

6.

Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standards.

Danos, Arpad M; Ritter, Deborah I; Wagner, Alex H; Krysiak, Kilannin; Sonkin, Dmitriy; Micheel, Christine; McCoy, Matthew; Rao, Shruti; Raca, Gordana; Boca, Simina M; Roy, Angshumoy; Barnell, Erica K; McMichael, Joshua F; Kiwala, Susanna; Coffman, Adam C; Kujan, Lynzey; Kulkarni, Shashikant; Griffith, Malachi; Madhavan, Subha; Griffith, Obi L.

Hum Mutat; 39(11): 1721-1732, 2018 11.

Artículo en Inglés | MEDLINE | ID: mdl-30311370

7.

Reply.

Barnell, Erica K; Kang, Yiming; Wurtzler, Elizabeth M; Griffith, Malachi; Chaudhuri, Aadel A; Griffith, Obi L.

Gastroenterology; 158(3): 793-794, 2020 02.

Artículo en Inglés | MEDLINE | ID: mdl-31743736

8.

Noninvasive Detection of High-Risk Adenomas Using Stool-Derived Eukaryotic RNA Sequences as Biomarkers.

Barnell, Erica K; Kang, Yiming; Wurtzler, Elizabeth M; Griffith, Malachi; Chaudhuri, Aadel A; Griffith, Obi L.

Gastroenterology; 157(3): 884-887.e3, 2019 09.

Artículo en Inglés | MEDLINE | ID: mdl-31154021

9.

Neoantigen Landscape Supports Feasibility of Personalized Cancer Vaccine for Follicular Lymphoma.

Ramirez, Cody A; Becker-Hapak, Michelle; Singhal, Kartik; Russler-Germain, David A; Frenkel, Felix; Barnell, Erica K; McClain, Ethan; Desai, Sweta; Schappe, Timothy; Onyeador, Onyinyechi C; Kudryashova, Olga; Belousov, Vladislav; Bagaev, Alexander; Ocheredko, Elena; Kiwala, Susanna; Hundal, Jasreet; Skidmore, Zachary L; Watkins, Marcus P; Mooney, Thomas B; Walker, Jason; Krysiak, Kilannin; Gomez, Felicia; Fronick, Catrina C; Fulton, Robert S; Schreiber, Robert D; Mehta-Shah, Neha; Cashen, Amanda F; Kahl, Brad S; Ataullakhanov, Ravshan; Bartlett, Nancy L; Griffith, Malachi; Griffith, Obi L; Fehniger, Todd A.

Blood Adv; 2024 May 07.

Artículo en Inglés | MEDLINE | ID: mdl-38713894

10.

Distinct clonal identities of B-ALLs arising after lenolidomide therapy for multiple myeloma.

Barnell, Erica K; Skidmore, Zachary L; Newcomer, Kenneth F; Chavez, Monique; Campbell, Katie M; Cotto, Kelsy C; Spies, Nicholas C; Ruzinova, Marianna B; Wang, Tianjiao; Abro, Brooj; Kreisel, Friederike; Parikh, Bijal A; Duncavage, Eric J; Frater, John L; Lee, Yi-Shan; Hassan, Anjum; King, Justin A; Kohnen, Daniel R; Fiala, Mark A; Welch, John S; Uy, Geoffrey L; Vij, Kiran; Vij, Ravi; Griffith, Malachi; Griffith, Obi L; Wartman, Lukas D.

Blood Adv; 7(2): 236-245, 2023 01 24.

Artículo en Inglés | MEDLINE | ID: mdl-36251745

11.

Personalized ctDNA micro-panels can monitor and predict clinical outcomes for patients with triple-negative breast cancer.

Barnell, Erica K; Fisk, Bryan; Skidmore, Zachary L; Cotto, Kelsy C; Basu, Anamika; Anand, Aparna; Richters, Megan M; Luo, Jingqin; Fronick, Catrina; Anurag, Meenakshi; Fulton, Robert; Ellis, Matthew J; Griffith, Obi L; Griffith, Malachi; Ademuyiwa, Foluso O.

Sci Rep; 12(1): 17732, 2022 10 22.

Artículo en Inglés | MEDLINE | ID: mdl-36273232

12.

In silico epitope prediction analyses highlight the potential for distracting antigen immunodominance with allogeneic cancer vaccines.

James, C Alston; Ronning, Peter; Cullinan, Darren; Cotto, Kelsy C; Barnell, Erica K; Campbell, Katie M; Skidmore, Zachary L; Sanford, Dominic E; Goedegebuure, S Peter; Gillanders, William E; Griffith, Obi L; Hawkins, William G; Griffith, Malachi.

Cancer Res Commun; 1(2): 115-126, 2021 11.

Artículo en Inglés | MEDLINE | ID: mdl-35611186

13.

Multitarget Stool RNA Test for Noninvasive Detection of Colorectal Neoplasias in a Multicenter, Prospective, and Retrospective Cohort.

Barnell, Erica K; Kang, Yiming; Barnell, Andrew R; Kruse, Kimberly R; Fiske, Jared; Pittz, Zachary R; Khan, Adnan R; Huebner, Thomas A; Holmes, Faith L; Griffith, Malachi; Griffith, Obi L; Chaudhuri, Aadel A; Wurtzler, Elizabeth M.

Clin Transl Gastroenterol; 12(5): e00360, 2021 05 24.

Artículo en Inglés | MEDLINE | ID: mdl-34029233

14.

Yap1 Mediates Trametinib Resistance in Head and Neck Squamous Cell Carcinomas.

Mudianto, Tenny; Campbell, Katie M; Webb, Jason; Zolkind, Paul; Skidmore, Zachary L; Riley, Rachel; Barnell, Erica K; Ozgenc, Ibrahim; Giri, Tusar; Dunn, Gavin P; Adkins, Douglas R; Griffith, Malachi; Egloff, Ann Marie; Griffith, Obi L; Uppaluri, Ravindra.

Clin Cancer Res; 27(8): 2326-2339, 2021 04 15.

Artículo en Inglés | MEDLINE | ID: mdl-33547198

15.

Impact of a 40-Gene Targeted Panel Test on Physician Decision Making for Patients With Acute Myeloid Leukemia.

Barnell, Erica K; Newcomer, Kenneth F; Skidmore, Zachary L; Krysiak, Kilannin; Anderson, Sydney R; Wartman, Lukas D; Oh, Stephen T; Welch, John S; Stockerl-Goldstein, Keith E; Vij, Ravi; Cashen, Amanda F; Pusic, Iskra; Westervelt, Peter; Abboud, Camille N; Ghobadi, Armin; Uy, Geoffrey L; Schroeder, Mark A; Dipersio, John F; Politi, Mary C; Spencer, David H; Duncavage, Eric J; Ley, Timothy J; Griffith, Malachi; Jacoby, Meagan A; Griffith, Obi L.

JCO Precis Oncol; 52021.

Artículo en Inglés | MEDLINE | ID: mdl-34036230

16.

CIViCpy: A Python Software Development and Analysis Toolkit for the CIViC Knowledgebase.

Wagner, Alex H; Kiwala, Susanna; Coffman, Adam C; McMichael, Joshua F; Cotto, Kelsy C; Mooney, Thomas B; Barnell, Erica K; Krysiak, Kilannin; Danos, Arpad M; Walker, Jason; Griffith, Obi L; Griffith, Malachi.

JCO Clin Cancer Inform; 4: 245-253, 2020 03.

Artículo en Inglés | MEDLINE | ID: mdl-32191543

17.

Neoadjuvant and Adjuvant Pembrolizumab in Resectable Locally Advanced, Human Papillomavirus-Unrelated Head and Neck Cancer: A Multicenter, Phase II Trial.

Uppaluri, Ravindra; Campbell, Katie M; Egloff, Ann Marie; Zolkind, Paul; Skidmore, Zachary L; Nussenbaum, Brian; Paniello, Randal C; Rich, Jason T; Jackson, Ryan; Pipkorn, Patrik; Michel, Loren S; Ley, Jessica; Oppelt, Peter; Dunn, Gavin P; Barnell, Erica K; Spies, Nicholas C; Lin, Tianxiang; Li, Tiantian; Mulder, David T; Hanna, Youstina; Cirlan, Iulia; Pugh, Trevor J; Mudianto, Tenny; Riley, Rachel; Zhou, Liye; Jo, Vickie Y; Stachler, Matthew D; Hanna, Glenn J; Kass, Jason; Haddad, Robert; Schoenfeld, Jonathan D; Gjini, Evisa; Lako, Ana; Thorstad, Wade; Gay, Hiram A; Daly, Mackenzie; Rodig, Scott J; Hagemann, Ian S; Kallogjeri, Dorina; Piccirillo, Jay F; Chernock, Rebecca D; Griffith, Malachi; Griffith, Obi L; Adkins, Douglas R.

Clin Cancer Res; 26(19): 5140-5152, 2020 10 01.

Artículo en Inglés | MEDLINE | ID: mdl-32665297

18.

A Spontaneous Aggressive ERα+ Mammary Tumor Model Is Driven by Kras Activation.

Campbell, Katie M; O'Leary, Kathleen A; Rugowski, Debra E; Mulligan, William A; Barnell, Erica K; Skidmore, Zachary L; Krysiak, Kilannin; Griffith, Malachi; Schuler, Linda A; Griffith, Obi L.

Cell Rep; 28(6): 1526-1537.e4, 2019 08 06.

Artículo en Inglés | MEDLINE | ID: mdl-31390566

19.

Open-Sourced CIViC Annotation Pipeline to Identify and Annotate Clinically Relevant Variants Using Single-Molecule Molecular Inversion Probes.

Barnell, Erica K; Waalkes, Adam; Mosior, Matt C; Penewit, Kelsi; Cotto, Kelsy C; Danos, Arpad M; Sheta, Lana M; Campbell, Katie M; Krysiak, Kilannin; Rieke, Damian; Spies, Nicholas C; Skidmore, Zachary L; Pritchard, Colin C; Fehniger, Todd A; Uppaluri, Ravindra; Govindan, Ramaswamy; Griffith, Malachi; Salipante, Stephen J; Griffith, Obi L.

JCO Clin Cancer Inform; 3: 1-12, 2019 10.

Artículo en Inglés | MEDLINE | ID: mdl-31618044

20.

Standard operating procedure for curation and clinical interpretation of variants in cancer.

Danos, Arpad M; Krysiak, Kilannin; Barnell, Erica K; Coffman, Adam C; McMichael, Joshua F; Kiwala, Susanna; Spies, Nicholas C; Sheta, Lana M; Pema, Shahil P; Kujan, Lynzey; Clark, Kaitlin A; Wollam, Amber Z; Rao, Shruti; Ritter, Deborah I; Sonkin, Dmitriy; Raca, Gordana; Lin, Wan-Hsin; Grisdale, Cameron J; Kim, Raymond H; Wagner, Alex H; Madhavan, Subha; Griffith, Malachi; Griffith, Obi L.

Genome Med; 11(1): 76, 2019 11 29.

Artículo en Inglés | MEDLINE | ID: mdl-31779674

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